Category Archives for Uncategorized

New methods

We are currently developing new methods for homology detection to continue to improve results in PHLAWD. In particular, to reduce the interaction and need for corrections. Developments will be pushed to github ASAP.

16. September 2015 by admin
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New feature: advanced queries with SQL

PHLAWD now has the ability to accept raw SQL query strings to use when searching the source database for potential sequences of interest. This provides a great deal more power than the default search functionality that simply matches against a … Continue reading

03. August 2012 by cody
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outlier detection

PHLAWD now has some procedures for outlier detection. The information can be found here. As always, git pull, make, sudo make install.

25. April 2012 by admin
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New division codes

It can be helpful to combine divisions for the database creation. I have added  two codes to do this met for all metazoan with divisions 1-5 1. pri – primate sequences 2. rod – rodent sequences 3. mam – other … Continue reading

04. April 2012 by admin
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Uploaded the link to the inv database

I loaded the inv database to the most recent release. Find it here.

02. April 2012 by admin
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Updated the link to the pln database

I updated the pln database to the most recent release. Find it here.

23. March 2012 by admin
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Building Genbank database

I just committed to git the ability to create the GenBank database with the PHLAWD program instead of the python scripts. This is much much faster due to a homemade flat Genbank file parser. To use this, just pull the most … Continue reading

23. March 2012 by admin
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